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SEQuel was developed using Java 6.0 and tested on several Linux/Unix operating systems. The graph library JGraphT was used for most graph operations.

SEQuel v1.0.2 Aug 24, 2012

Bug fix release:

  • Added automatic detection of external insert-size (in prep.pl).
  • Added option to specify minimal number of threads ('-u').
  • Added option to specify output directory in SEQuel.jar ('-o').
  • Fixed bug related to the configuration file ('-C' option).
  • Fixed stability issue related to writing temporary files.
 

SEQuel v1.0.1 Mar 17, 2012

First public release of SEQuel.